IPGB PSBC SAS maintains a close collaboration with Slovak universities on the level of lecturing and practicum courses, as well as leading bachelor, diploma and PhD thesis. The institute also provides a consultation service in the fields of its mission and R&D ctivities.

The most intensive collaboration is developed with universities in Nitra - Slovak University of Agriculture in Nitra and Constantine the Philosopher University in Nitra. These three institutions signed in 2013 partnership agreement in the frame of joint EU Structural Funds project „Establishment of Research Centre AgroBioTech". The aim of project is to establish the regional competent center of applied research and development in the field of Agro-Bio-Technologies in Nitra (AgroBioTech) which will integrate the excellent applied research through partnership of above mentioned institutions.

The agreement of cooperation was signed betweeen IPGB PSBC SAS and University of Prešov in order to intesify and strengthen reciprocal collaboration between both institutions within a framework of research, education and realization activities in applying obtained results in practice.

General agreement about collaboration relating to doctorate study were signed with the Faculty of Biotechnology and Food Sciences and the Faculty of Agrobiology and Food Resources, Slovak University of Agriculture in Nitra and the Faculty of Natural Sciences, Comenius University in Bratislava.